Combinatorial Pattern Matching: ... Annual Symposium

algorithm alignment alphabet Apostolico approximate automaton Bioinformatics bits bound breakpoint Burrows-Wheeler transform c-token character column complexity Computer Science consensus PQ tree consider constraints construction Corasick corresponding Crochemore data structure defined Definition denote DFTDP DIST DNA sequences dynamic programming edges edit distance efficient encoding errors example exons function gene genome given graph Hamming distance implementation input integer interval label Lemma length linear LNCS mass matching problem Max-SNP maximal median minimal consensus PQ mismatches motif multiset node O(n log obtained occurrences optimal output p₁ pair Parsing path pattern matching peak permutations polynomial position PQ tree prefix prefix-free preprocessing Proc Proof protein regular expression rigid subsequence S₁ score Section shift distance space spin images Springer-Verlag string matching substring suffix array suffix tree term tree Theorem trie variable vector vertex WDWG words